Solution
This issue happens because the incoming frames have extended frame IDs and the database used to read the input is not configured to read extended frames.
Although the frame IDs seem to be same, NI-XNET is capable of differentiating between extended IDs and standard IDs and will only return the frames that match the database settings.
This could be fixed by editing the database and selecting the
29bit ID option in the NI-XNET Database Editor as shown in the image below.