Solution
This issue can happen because there is an incorrect assignation of the PrimaryMAC value(For instance your PrimaryMAC value corresponds to the MAC address for the physical port 2).
In order to resolve this issue, you need to go to the ni-rt.ini file within your RT target disk. Right there you need to modify the PrimaryMAC value to be the MAC Address that corresponds to the MAC Address of the physical port 1. Then you need to assign the adapters by changing the ini file values.