Additional Information
This behavior happens because of the difference between the trigger paths and the data path.
There is no compensation for differences in delay between the digital trigger paths and the data path for a majority of NI products. Because the digital trigger path has a short delay relative to the data path, the digital trigger will be detected before the data signal is digitized by the ADC.
This makes a certain length of data unwanted. And the length of the unwanted data is constant for a given configuration or product.
Figure 1: PXIe-5171(Reconfigurable Oscilloscope) Block Diagram, PXI Triggers connected directly through FPGA
Figure 2: PXIe-5122(non-Reconfigurable Oscilloscope) Block Diagram, PXI Triggers going along the path.