It is possible to synchronize counter and analog inputs. The Synchronous Analog and Encoder Inputs tutorial provides an example VI that synchronizes counter and analog inputs using a Producer/Consumer architecture.
The example VI consists of a Front Panel that allows for configuration of all acquisition settings:
The Synchronization Explained tutorial walks through different synchronization options available to the PXI(e) platform. Depending on the hardware, the different synchronization options can be utilized to synchronize counter and analog inputs.
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